Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Scn4aQ9ER60 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Gm9347-201ENSMUST00000211473 1607 ntBASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Gm12403-201ENSMUST00000121384 959 ntBASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Gm4335-201ENSMUST00000182581 1004 ntBASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scn4aQ9ER60 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Gm15770-201ENSMUST00000117498 584 ntBASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Ccdc166-201ENSMUST00000182172 2584 ntBASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Gm19430-201ENSMUST00000193847 2137 ntBASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn4aQ9ER60 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Gm10752-201ENSMUST00000218348 729 ntBASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 App-207ENSMUST00000227737 2827 ntBASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Gm9211-201ENSMUST00000182882 975 ntBASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn4aQ9ER60 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn4aQ9ER60 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
Scn4aQ9ER60 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn4aQ9ER60 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Scn4aQ9ER60 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn4aQ9ER60 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn4aQ9ER60 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Gm8908-201ENSMUST00000121633 1024 ntBASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Gm14665-201ENSMUST00000122294 557 ntBASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Gm23699-201ENSMUST00000158835 135 ntBASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Gm25700-201ENSMUST00000177693 110 ntBASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Scn4aQ9ER60 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 CT030704.2-201ENSMUST00000228887 494 ntBASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Gm16372-201ENSMUST00000073088 450 ntBASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 CU062626.3-201ENSMUST00000225522 1411 ntBASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Scn4aQ9ER60 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms