Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Snrnp40Q6PE01 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Gm17420-201ENSMUST00000164753 153 ntBASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Gm42693-201ENSMUST00000196779 631 ntBASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Gm18905-201ENSMUST00000205454 928 ntBASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 AC125117.1-201ENSMUST00000228121 468 ntBASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Gm10478-201ENSMUST00000084451 396 ntBASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Snrnp40Q6PE01 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Gm11814-201ENSMUST00000119515 929 ntBASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Gm15429-201ENSMUST00000151268 798 ntBASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Snora78-201ENSMUST00000158630 128 ntBASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 AC140451.2-201ENSMUST00000228030 664 ntBASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Snrnp40Q6PE01 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC12.53□□□□□ -0.4
Snrnp40Q6PE01 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms