Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 AC121801.1-201ENSMUST00000225363 1899 ntBASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm5279-201ENSMUST00000199575 745 ntBASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 AC154171.1-201ENSMUST00000224610 643 ntBASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm45630-201ENSMUST00000210243 1911 ntBASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc88aQ5SNZ0 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 AC153872.1-201ENSMUST00000199539 128 ntBASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 AC165157.4-201ENSMUST00000220587 139 ntBASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Ccdc88aQ5SNZ0 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm44608-201ENSMUST00000206827 855 ntBASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm7558-201ENSMUST00000193221 1165 ntBASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Ighv1-25-201ENSMUST00000195638 345 ntBASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms