Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cux1P53564 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC21.7■■□□□ 1.06
Cux1P53564 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cux1P53564 Gm42853-201ENSMUST00000201273 1387 ntBASIC21.7■■□□□ 1.06
Cux1P53564 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cux1P53564 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cux1P53564 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cux1P53564 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cux1P53564 Gm22018-201ENSMUST00000104357 131 ntBASIC21.7■■□□□ 1.06
Cux1P53564 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cux1P53564 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Cux1P53564 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
Cux1P53564 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC21.7■■□□□ 1.06
Cux1P53564 Mir8109-201ENSMUST00000184375 117 ntBASIC21.7■■□□□ 1.06
Cux1P53564 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC21.7■■□□□ 1.06
Cux1P53564 Gm9823-201ENSMUST00000051212 327 ntBASIC21.7■■□□□ 1.06
Cux1P53564 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Cux1P53564 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Cux1P53564 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Cux1P53564 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cux1P53564 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC21.69■■□□□ 1.06
Cux1P53564 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC21.69■■□□□ 1.06
Cux1P53564 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Cux1P53564 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Cux1P53564 Gm10156-201ENSMUST00000122364 462 ntBASIC21.69■■□□□ 1.06
Cux1P53564 Gm3809-201ENSMUST00000180973 1006 ntBASIC21.69■■□□□ 1.06
Cux1P53564 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC21.69■■□□□ 1.06
Cux1P53564 Gm42929-201ENSMUST00000198374 1286 ntBASIC21.69■■□□□ 1.06
Cux1P53564 Gm43118-201ENSMUST00000199149 775 ntBASIC21.69■■□□□ 1.06
Cux1P53564 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC21.69■■□□□ 1.06
Cux1P53564 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cux1P53564 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC21.68■■□□□ 1.06
Cux1P53564 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cux1P53564 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cux1P53564 Gm5187-201ENSMUST00000117317 991 ntBASIC21.68■■□□□ 1.06
Cux1P53564 Gm12203-201ENSMUST00000118235 598 ntBASIC21.68■■□□□ 1.06
Cux1P53564 Gm12209-201ENSMUST00000120089 596 ntBASIC21.68■■□□□ 1.06
Cux1P53564 Gm22331-201ENSMUST00000158066 136 ntBASIC21.68■■□□□ 1.06
Cux1P53564 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cux1P53564 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cux1P53564 Gm44974-201ENSMUST00000206387 1279 ntBASIC21.68■■□□□ 1.06
Cux1P53564 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cux1P53564 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Cux1P53564 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Cux1P53564 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cux1P53564 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cux1P53564 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cux1P53564 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cux1P53564 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Cux1P53564 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cux1P53564 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cux1P53564 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cux1P53564 Gm15371-201ENSMUST00000117057 784 ntBASIC21.67■■□□□ 1.06
Cux1P53564 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Cux1P53564 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC21.67■■□□□ 1.06
Cux1P53564 Gm40466-201ENSMUST00000212174 422 ntBASIC21.67■■□□□ 1.06
Cux1P53564 AC155237.1-201ENSMUST00000226196 1279 ntBASIC21.67■■□□□ 1.06
Cux1P53564 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cux1P53564 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cux1P53564 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cux1P53564 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC21.67■■□□□ 1.06
Cux1P53564 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC21.67■■□□□ 1.06
Cux1P53564 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Cux1P53564 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cux1P53564 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Cux1P53564 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Gm29649-201ENSMUST00000185649 419 ntBASIC21.66■■□□□ 1.06
Cux1P53564 Gm5370-201ENSMUST00000187187 574 ntBASIC21.66■■□□□ 1.06
Cux1P53564 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Cux1P53564 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Cux1P53564 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC21.66■■□□□ 1.06
Cux1P53564 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cux1P53564 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms