Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Chd3B1AR17 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC14.02□□□□□ -0.16
Chd3B1AR17 H2-Pa-201ENSMUST00000182803 626 ntBASIC14.02□□□□□ -0.16
Chd3B1AR17 Gm27838-201ENSMUST00000184829 128 ntBASIC14.02□□□□□ -0.16
Chd3B1AR17 Gm31326-201ENSMUST00000191856 1048 ntBASIC14.02□□□□□ -0.16
Chd3B1AR17 Gm45059-201ENSMUST00000205558 1077 ntBASIC14.02□□□□□ -0.16
Chd3B1AR17 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC14.02□□□□□ -0.16
Chd3B1AR17 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Chd3B1AR17 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.02□□□□□ -0.16
Chd3B1AR17 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Chd3B1AR17 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Chd3B1AR17 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC14.02□□□□□ -0.17
Chd3B1AR17 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC14.02□□□□□ -0.17
Chd3B1AR17 Ighv1-25-201ENSMUST00000195638 345 ntBASIC14.02□□□□□ -0.17
Chd3B1AR17 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Chd3B1AR17 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Chd3B1AR17 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
Chd3B1AR17 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Ldb3-207ENSMUST00000227819 1499 ntBASIC14.01□□□□□ -0.17
Chd3B1AR17 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC14.01□□□□□ -0.17
Chd3B1AR17 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Chd3B1AR17 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Chd3B1AR17 AC115735.4-201ENSMUST00000227460 1944 ntBASIC14.01□□□□□ -0.17
Chd3B1AR17 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Chd3B1AR17 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Chd3B1AR17 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Chd3B1AR17 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Gm43598-201ENSMUST00000202482 2479 ntBASIC14□□□□□ -0.17
Chd3B1AR17 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC14□□□□□ -0.17
Chd3B1AR17 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14□□□□□ -0.17
Chd3B1AR17 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Chd3B1AR17 Gm44608-201ENSMUST00000206827 855 ntBASIC14□□□□□ -0.17
Chd3B1AR17 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Chd3B1AR17 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Chd3B1AR17 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Mmp14-206ENSMUST00000225641 3238 ntBASIC14□□□□□ -0.17
Chd3B1AR17 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC14□□□□□ -0.17
Chd3B1AR17 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC14□□□□□ -0.17
Chd3B1AR17 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Gm12859-201ENSMUST00000117834 427 ntBASIC14□□□□□ -0.17
Chd3B1AR17 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Chd3B1AR17 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Chd3B1AR17 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Chd3B1AR17 AL593843.1-201ENSMUST00000195891 145 ntBASIC14□□□□□ -0.17
Chd3B1AR17 AC159006.1-201ENSMUST00000226396 258 ntBASIC14□□□□□ -0.17
Chd3B1AR17 Gm9797-201ENSMUST00000052902 613 ntBASIC14□□□□□ -0.17
Chd3B1AR17 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC14□□□□□ -0.17
Chd3B1AR17 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC14□□□□□ -0.17
Chd3B1AR17 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 75.9 ms