Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm2651-201ENSMUST00000203560 838 ntBASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Gm18246-201ENSMUST00000221023 728 ntBASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 AC154527.4-201ENSMUST00000224364 1667 ntBASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.19□□□□□ -0.14
Lima1Q9ERG0 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Gm13294-201ENSMUST00000121757 1330 ntBASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 AC130669.1-201ENSMUST00000228537 1672 ntBASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.18□□□□□ -0.14
Lima1Q9ERG0 AC155729.1-201ENSMUST00000227758 544 ntBASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Mzt1-203ENSMUST00000227948 952 ntBASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lima1Q9ERG0 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Lima1Q9ERG0 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms