Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm14822-201ENSMUST00000122247 291 ntBASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Gm6736-201ENSMUST00000166583 948 ntBASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Ksr1-207ENSMUST00000226282 5260 ntBASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Gm9726-201ENSMUST00000180321 678 ntBASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 AC155252.2-201ENSMUST00000226946 680 ntBASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Gm45779-201ENSMUST00000212189 4064 ntBASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Prpf40aQ9R1C7 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
Prpf40aQ9R1C7 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Prpf40aQ9R1C7 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
Prpf40aQ9R1C7 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Prpf40aQ9R1C7 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
Prpf40aQ9R1C7 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Prpf40aQ9R1C7 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Prpf40aQ9R1C7 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Prpf40aQ9R1C7 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Gm15483-201ENSMUST00000120338 456 ntBASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Prpf40aQ9R1C7 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Gm27702-201ENSMUST00000184512 56 ntBASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Gm2451-201ENSMUST00000199447 999 ntBASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Gm10290-201ENSMUST00000200451 999 ntBASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Prpf40aQ9R1C7 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms