Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Gm14660-201ENSMUST00000119809 575 ntBASIC16.8■□□□□ 0.28
Scn11aQ9R053 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC16.8■□□□□ 0.28
Scn11aQ9R053 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.8■□□□□ 0.28
Scn11aQ9R053 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Scn11aQ9R053 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm27839-201ENSMUST00000184242 106 ntBASIC16.79■□□□□ 0.28
Scn11aQ9R053 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 AC125117.1-201ENSMUST00000228121 468 ntBASIC16.79■□□□□ 0.28
Scn11aQ9R053 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm11557-201ENSMUST00000120200 1008 ntBASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm8927-201ENSMUST00000181978 981 ntBASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Gm3222-201ENSMUST00000071282 990 ntBASIC16.79■□□□□ 0.28
Scn11aQ9R053 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Scn11aQ9R053 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Mir692-1-201ENSMUST00000102263 109 ntBASIC16.78■□□□□ 0.28
Scn11aQ9R053 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Trav4d-2-201ENSMUST00000120914 335 ntBASIC16.78■□□□□ 0.28
Scn11aQ9R053 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC16.78■□□□□ 0.28
Scn11aQ9R053 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Scn11aQ9R053 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Scn11aQ9R053 Gm15770-201ENSMUST00000117498 584 ntBASIC16.77■□□□□ 0.28
Scn11aQ9R053 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Scn11aQ9R053 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Scn11aQ9R053 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Scn11aQ9R053 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
Scn11aQ9R053 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Scn11aQ9R053 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Scn11aQ9R053 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Scn11aQ9R053 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Scn11aQ9R053 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Scn11aQ9R053 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Scn11aQ9R053 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
Scn11aQ9R053 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
Scn11aQ9R053 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms