Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf1Q9EPU4 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf1Q9EPU4 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf1Q9EPU4 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC19.69■□□□□ 0.74
Cpsf1Q9EPU4 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Cpsf1Q9EPU4 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Cpsf1Q9EPU4 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf1Q9EPU4 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 AC149294.4-201ENSMUST00000227870 882 ntBASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
Cpsf1Q9EPU4 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 AC162801.1-201ENSMUST00000220612 198 ntBASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf1Q9EPU4 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gm15678-201ENSMUST00000117573 960 ntBASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gm5354-201ENSMUST00000182417 973 ntBASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gm43438-201ENSMUST00000198133 379 ntBASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gm45059-201ENSMUST00000205558 1077 ntBASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gm9908-201ENSMUST00000211534 448 ntBASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gm38037-201ENSMUST00000192600 1624 ntBASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Gm9115-201ENSMUST00000120192 1348 ntBASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf1Q9EPU4 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 AC166574.6-201ENSMUST00000227889 1806 ntBASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Gm29741-201ENSMUST00000192667 421 ntBASIC19.65■□□□□ 0.74
Cpsf1Q9EPU4 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms