Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm13689-201ENSMUST00000119360 685 ntBASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Gm15824-201ENSMUST00000119516 955 ntBASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Gm9002-201ENSMUST00000178437 499 ntBASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 AC155258.1-201ENSMUST00000219303 253 ntBASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Ccdc88bQ4QRL3 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Gm11557-201ENSMUST00000120200 1008 ntBASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Gm8927-201ENSMUST00000181978 981 ntBASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Gm3222-201ENSMUST00000071282 990 ntBASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ccdc88bQ4QRL3 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ccdc88bQ4QRL3 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 CT030704.2-201ENSMUST00000228887 494 ntBASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Gm21038-201ENSMUST00000222205 1383 ntBASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 AC161252.3-201ENSMUST00000225465 1549 ntBASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Gm10605-202ENSMUST00000183019 3198 ntBASIC23.15■■□□□ 1.3
Ccdc88bQ4QRL3 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Ccdc88bQ4QRL3 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC23.14■■□□□ 1.3
Ccdc88bQ4QRL3 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Ccdc88bQ4QRL3 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Ccdc88bQ4QRL3 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Ccdc88bQ4QRL3 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Ccdc88bQ4QRL3 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
Ccdc88bQ4QRL3 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
Ccdc88bQ4QRL3 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Gm37305-201ENSMUST00000195714 4279 ntBASIC23.14■■□□□ 1.29
Ccdc88bQ4QRL3 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ccdc88bQ4QRL3 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Ccdc88bQ4QRL3 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ccdc88bQ4QRL3 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Ccdc88bQ4QRL3 Gm8775-201ENSMUST00000170943 1327 ntBASIC23.13■■□□□ 1.29
Ccdc88bQ4QRL3 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Ccdc88bQ4QRL3 AC126549.2-201ENSMUST00000223997 1976 ntBASIC23.13■■□□□ 1.29
Ccdc88bQ4QRL3 AL645783.1-201ENSMUST00000221416 1832 ntBASIC23.13■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms