Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Gm45167-201ENSMUST00000208007 322 ntBASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 AC164567.1-201ENSMUST00000219185 960 ntBASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 AV026068-213ENSMUST00000223675 1171 ntBASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 AC147366.1-201ENSMUST00000227671 852 ntBASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ptchd3Q0EEE2 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Gm18195-201ENSMUST00000207604 706 ntBASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC13.94□□□□□ -0.18
Ptchd3Q0EEE2 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Gm5184-201ENSMUST00000220417 1702 ntBASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Gm6184-201ENSMUST00000120403 1261 ntBASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Gm7787-201ENSMUST00000216858 688 ntBASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Gm15590-201ENSMUST00000078419 552 ntBASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ptchd3Q0EEE2 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ptchd3Q0EEE2 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms