Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC13.18□□□□□ -0.3
Cdh11P55288 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdh11P55288 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Cdh11P55288 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Cdh11P55288 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Gm38577-201ENSMUST00000221531 4545 ntBASIC13.17□□□□□ -0.3
Cdh11P55288 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Cdh11P55288 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Gm37019-201ENSMUST00000192133 2134 ntBASIC13.17□□□□□ -0.3
Cdh11P55288 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC13.17□□□□□ -0.3
Cdh11P55288 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Gm28182-201ENSMUST00000188354 2477 ntBASIC13.17□□□□□ -0.3
Cdh11P55288 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Gm45779-201ENSMUST00000212189 4064 ntBASIC13.17□□□□□ -0.3
Cdh11P55288 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdh11P55288 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Cdh11P55288 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.16□□□□□ -0.3
Cdh11P55288 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC13.16□□□□□ -0.3
Cdh11P55288 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Cdh11P55288 Gm25911-201ENSMUST00000157621 56 ntBASIC13.16□□□□□ -0.3
Cdh11P55288 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC13.16□□□□□ -0.3
Cdh11P55288 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Cdh11P55288 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Cdh11P55288 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
Cdh11P55288 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.16□□□□□ -0.3
Cdh11P55288 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdh11P55288 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdh11P55288 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms