Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Msh6P54276 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC18.16■□□□□ 0.5
Msh6P54276 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Msh6P54276 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh6P54276 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh6P54276 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Msh6P54276 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh6P54276 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh6P54276 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Msh6P54276 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Msh6P54276 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC18.15■□□□□ 0.5
Msh6P54276 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC18.15■□□□□ 0.5
Msh6P54276 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC18.15■□□□□ 0.5
Msh6P54276 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC18.15■□□□□ 0.5
Msh6P54276 AC153872.1-201ENSMUST00000199539 128 ntBASIC18.15■□□□□ 0.5
Msh6P54276 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC18.15■□□□□ 0.5
Msh6P54276 AC150560.1-201ENSMUST00000227731 1187 ntBASIC18.15■□□□□ 0.5
Msh6P54276 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh6P54276 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
Msh6P54276 Gm9856-201ENSMUST00000217077 2578 ntBASIC18.15■□□□□ 0.5
Msh6P54276 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Msh6P54276 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Msh6P54276 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Msh6P54276 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Msh6P54276 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh6P54276 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Msh6P54276 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh6P54276 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Msh6P54276 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh6P54276 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC18.14■□□□□ 0.49
Msh6P54276 AC154527.2-201ENSMUST00000225256 1466 ntBASIC18.14■□□□□ 0.49
Msh6P54276 AC131068.2-201ENSMUST00000226175 1453 ntBASIC18.14■□□□□ 0.49
Msh6P54276 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh6P54276 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC18.14■□□□□ 0.49
Msh6P54276 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC18.14■□□□□ 0.49
Msh6P54276 AC166349.1-201ENSMUST00000220866 695 ntBASIC18.14■□□□□ 0.49
Msh6P54276 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh6P54276 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC18.14■□□□□ 0.49
Msh6P54276 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh6P54276 Gm45630-201ENSMUST00000210243 1911 ntBASIC18.14■□□□□ 0.49
Msh6P54276 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh6P54276 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Msh6P54276 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
Msh6P54276 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh6P54276 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh6P54276 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh6P54276 AC114008.2-201ENSMUST00000227699 1347 ntBASIC18.13■□□□□ 0.49
Msh6P54276 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Msh6P54276 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Msh6P54276 Gm14452-201ENSMUST00000118680 1632 ntBASIC18.13■□□□□ 0.49
Msh6P54276 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msh6P54276 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msh6P54276 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh6P54276 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msh6P54276 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Msh6P54276 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Msh6P54276 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Msh6P54276 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
Msh6P54276 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Msh6P54276 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Msh6P54276 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC18.12■□□□□ 0.49
Msh6P54276 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Msh6P54276 Gm38319-201ENSMUST00000194537 1266 ntBASIC18.12■□□□□ 0.49
Msh6P54276 Gm5279-201ENSMUST00000199575 745 ntBASIC18.12■□□□□ 0.49
Msh6P54276 AC154806.6-201ENSMUST00000228192 202 ntBASIC18.12■□□□□ 0.49
Msh6P54276 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 AC162938.1-201ENSMUST00000213140 2323 ntBASIC18.12■□□□□ 0.49
Msh6P54276 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh6P54276 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC18.12■□□□□ 0.49
Msh6P54276 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 64.6 ms