Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Col3a1P08121 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Col3a1P08121 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC17.02■□□□□ 0.31
Col3a1P08121 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC17.01■□□□□ 0.31
Col3a1P08121 Gm28911-201ENSMUST00000188837 117 ntBASIC17.01■□□□□ 0.31
Col3a1P08121 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC17.01■□□□□ 0.31
Col3a1P08121 Gm5035-201ENSMUST00000215581 927 ntBASIC17.01■□□□□ 0.31
Col3a1P08121 AC149294.4-201ENSMUST00000227870 882 ntBASIC17.01■□□□□ 0.31
Col3a1P08121 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Gm44981-201ENSMUST00000205549 1943 ntBASIC17.01■□□□□ 0.31
Col3a1P08121 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Col3a1P08121 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Col3a1P08121 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col3a1P08121 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Col3a1P08121 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Col3a1P08121 Gm11524-201ENSMUST00000119349 807 ntBASIC17■□□□□ 0.31
Col3a1P08121 Gm15376-201ENSMUST00000122258 783 ntBASIC17■□□□□ 0.31
Col3a1P08121 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Mir7085-201ENSMUST00000184353 66 ntBASIC17■□□□□ 0.31
Col3a1P08121 Gm8463-201ENSMUST00000208573 613 ntBASIC17■□□□□ 0.31
Col3a1P08121 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Gm45133-201ENSMUST00000207548 2773 ntBASIC17■□□□□ 0.31
Col3a1P08121 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Gm5912-201ENSMUST00000122282 1438 ntBASIC17■□□□□ 0.31
Col3a1P08121 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
Col3a1P08121 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC17■□□□□ 0.31
Col3a1P08121 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC17■□□□□ 0.31
Col3a1P08121 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col3a1P08121 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC16.99■□□□□ 0.31
Col3a1P08121 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC16.99■□□□□ 0.31
Col3a1P08121 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC16.99■□□□□ 0.31
Col3a1P08121 Gm9002-201ENSMUST00000178437 499 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 AC125350.2-201ENSMUST00000224737 727 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 Gm9899-201ENSMUST00000065519 555 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Col3a1P08121 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC16.99■□□□□ 0.31
Col3a1P08121 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC16.99■□□□□ 0.31
Col3a1P08121 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Col3a1P08121 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Gm42471-201ENSMUST00000201457 1865 ntBASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms