Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Gm10812-201ENSMUST00000099864 546 ntBASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem1Q9JKE2 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Mir5130-201ENSMUST00000175160 84 ntBASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Gm27011-201ENSMUST00000182352 972 ntBASIC12.96□□□□□ -0.33
Trem1Q9JKE2 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Gm7367-201ENSMUST00000057611 492 ntBASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem1Q9JKE2 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem1Q9JKE2 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem1Q9JKE2 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem1Q9JKE2 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Trem1Q9JKE2 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem1Q9JKE2 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem1Q9JKE2 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Mir6404-201ENSMUST00000183699 94 ntBASIC12.95□□□□□ -0.34
Trem1Q9JKE2 AL672049.1-201ENSMUST00000197943 91 ntBASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem1Q9JKE2 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Gm44981-201ENSMUST00000205549 1943 ntBASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Gm13559-201ENSMUST00000120476 863 ntBASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trem1Q9JKE2 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms