Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Gm44241-201ENSMUST00000203230 1662 ntBASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc28bQ8CEG5 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm43570-201ENSMUST00000199951 3688 ntBASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 AC151836.1-202ENSMUST00000226259 753 ntBASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc28bQ8CEG5 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc28bQ8CEG5 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28bQ8CEG5 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28bQ8CEG5 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28bQ8CEG5 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.27□□□□□ -0.12
Ccdc28bQ8CEG5 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28bQ8CEG5 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc28bQ8CEG5 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms