Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Gm44729-201ENSMUST00000206759 2052 ntBASIC12.31□□□□□ -0.44
Col8a1Q00780 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Col8a1Q00780 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Col8a1Q00780 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
Col8a1Q00780 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Gm15678-201ENSMUST00000117573 960 ntBASIC12.3□□□□□ -0.44
Col8a1Q00780 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Gm8835-201ENSMUST00000173096 1169 ntBASIC12.3□□□□□ -0.44
Col8a1Q00780 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.3□□□□□ -0.44
Col8a1Q00780 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Gm42693-201ENSMUST00000196779 631 ntBASIC12.3□□□□□ -0.44
Col8a1Q00780 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 CT009510.1-201ENSMUST00000227972 270 ntBASIC12.3□□□□□ -0.44
Col8a1Q00780 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col8a1Q00780 Gm9200-201ENSMUST00000118513 1354 ntBASIC12.3□□□□□ -0.44
Col8a1Q00780 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC12.3□□□□□ -0.44
Col8a1Q00780 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm6222-201ENSMUST00000120787 396 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm29310-201ENSMUST00000185468 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21825-201ENSMUST00000185728 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm29109-201ENSMUST00000185895 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21896-201ENSMUST00000186520 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21873-201ENSMUST00000186728 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21794-201ENSMUST00000187056 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21880-201ENSMUST00000187275 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21826-201ENSMUST00000187451 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21198-201ENSMUST00000188393 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm28911-201ENSMUST00000188837 117 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21749-201ENSMUST00000189343 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21901-201ENSMUST00000189568 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm29424-201ENSMUST00000189716 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm28599-201ENSMUST00000189838 694 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21867-201ENSMUST00000189917 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm29269-201ENSMUST00000190087 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21722-201ENSMUST00000190153 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm28423-201ENSMUST00000190701 696 ntBASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms