Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm13385-201ENSMUST00000121089 220 ntBASIC17.05■□□□□ 0.32
Col3a1P08121 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC17.05■□□□□ 0.32
Col3a1P08121 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Col3a1P08121 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC17.05■□□□□ 0.32
Col3a1P08121 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col3a1P08121 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC17.05■□□□□ 0.32
Col3a1P08121 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col3a1P08121 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC17.05■□□□□ 0.32
Col3a1P08121 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC17.05■□□□□ 0.32
Col3a1P08121 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC17.05■□□□□ 0.32
Col3a1P08121 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 AC153962.4-201ENSMUST00000217878 242 ntBASIC17.05■□□□□ 0.32
Col3a1P08121 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col3a1P08121 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 AC115735.4-201ENSMUST00000227460 1944 ntBASIC17.04■□□□□ 0.32
Col3a1P08121 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.04■□□□□ 0.32
Col3a1P08121 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Col3a1P08121 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 Gm6159-201ENSMUST00000191249 1724 ntBASIC17.04■□□□□ 0.32
Col3a1P08121 AC114543.1-201ENSMUST00000226451 1558 ntBASIC17.04■□□□□ 0.32
Col3a1P08121 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Col3a1P08121 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC17.04■□□□□ 0.32
Col3a1P08121 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC17.04■□□□□ 0.32
Col3a1P08121 Gm2495-201ENSMUST00000191160 466 ntBASIC17.04■□□□□ 0.32
Col3a1P08121 Ighv1-51-201ENSMUST00000192903 354 ntBASIC17.04■□□□□ 0.32
Col3a1P08121 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC17.04■□□□□ 0.32
Col3a1P08121 Gm19078-201ENSMUST00000206311 727 ntBASIC17.04■□□□□ 0.32
Col3a1P08121 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Col3a1P08121 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC17.04■□□□□ 0.32
Col3a1P08121 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col3a1P08121 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Col3a1P08121 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Col3a1P08121 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Col3a1P08121 AC155258.1-201ENSMUST00000219303 253 ntBASIC17.03■□□□□ 0.32
Col3a1P08121 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Mir497b-201ENSMUST00000093601 125 ntBASIC17.03■□□□□ 0.32
Col3a1P08121 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Col3a1P08121 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC17.03■□□□□ 0.32
Col3a1P08121 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col3a1P08121 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Col3a1P08121 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
Col3a1P08121 Gm15806-201ENSMUST00000120696 955 ntBASIC17.02■□□□□ 0.32
Col3a1P08121 Gm26464-201ENSMUST00000157094 305 ntBASIC17.02■□□□□ 0.32
Col3a1P08121 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Col3a1P08121 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 AC131690.1-201ENSMUST00000218406 374 ntBASIC17.02■□□□□ 0.32
Col3a1P08121 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC17.02■□□□□ 0.32
Col3a1P08121 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col3a1P08121 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
Col3a1P08121 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms