Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Chd3B1AR17 Gm7488-201ENSMUST00000117148 684 ntBASIC14.15□□□□□ -0.14
Chd3B1AR17 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Chd3B1AR17 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Gm45667-201ENSMUST00000210380 1316 ntBASIC14.15□□□□□ -0.14
Chd3B1AR17 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Chd3B1AR17 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Chd3B1AR17 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Chd3B1AR17 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Chd3B1AR17 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Chd3B1AR17 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC14.14□□□□□ -0.15
Chd3B1AR17 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.14□□□□□ -0.15
Chd3B1AR17 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Chd3B1AR17 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Chd3B1AR17 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Chd3B1AR17 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.14□□□□□ -0.15
Chd3B1AR17 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Chd3B1AR17 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Chd3B1AR17 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC14.14□□□□□ -0.15
Chd3B1AR17 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC14.14□□□□□ -0.15
Chd3B1AR17 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC14.14□□□□□ -0.15
Chd3B1AR17 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Gm45133-201ENSMUST00000207548 2773 ntBASIC14.14□□□□□ -0.15
Chd3B1AR17 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Chd3B1AR17 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Gm4204-201ENSMUST00000110798 1231 ntBASIC14.13□□□□□ -0.15
Chd3B1AR17 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Gm8749-201ENSMUST00000117737 331 ntBASIC14.13□□□□□ -0.15
Chd3B1AR17 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Chd3B1AR17 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Gm37736-201ENSMUST00000193564 2802 ntBASIC14.13□□□□□ -0.15
Chd3B1AR17 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.13□□□□□ -0.15
Chd3B1AR17 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC14.13□□□□□ -0.15
Chd3B1AR17 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.13□□□□□ -0.15
Chd3B1AR17 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Chd3B1AR17 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Chd3B1AR17 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Chd3B1AR17 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Chd3B1AR17 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Chd3B1AR17 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Chd3B1AR17 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Chd3B1AR17 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Chd3B1AR17 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Chd3B1AR17 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms