Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Gm6263-201ENSMUST00000120029 1342 ntBASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 BC037039-201ENSMUST00000192003 2205 ntBASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Gm4875-201ENSMUST00000118257 786 ntBASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Gm15653-201ENSMUST00000119247 907 ntBASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim54Q9ERP3 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Gm45453-201ENSMUST00000211758 853 ntBASIC15.66■□□□□ 0.1
Trim54Q9ERP3 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim54Q9ERP3 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Gm24694-201ENSMUST00000180054 110 ntBASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Gm27663-201ENSMUST00000184839 110 ntBASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim54Q9ERP3 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms