Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Gm18624-201ENSMUST00000220966 658 ntBASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Gm10584-201ENSMUST00000207036 2628 ntBASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Usp40Q8BWR4 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Gm12091-201ENSMUST00000146791 830 ntBASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp40Q8BWR4 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Usp40Q8BWR4 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Usp40Q8BWR4 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
Usp40Q8BWR4 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
Usp40Q8BWR4 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC19.77■□□□□ 0.75
Usp40Q8BWR4 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Usp40Q8BWR4 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Gm21470-201ENSMUST00000187680 696 ntBASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Gm4081-201ENSMUST00000195287 1838 ntBASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Gm9115-201ENSMUST00000120192 1348 ntBASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp40Q8BWR4 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC19.75■□□□□ 0.75
Usp40Q8BWR4 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 AC130829.1-201ENSMUST00000221548 494 ntBASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
Usp40Q8BWR4 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 AC166574.6-201ENSMUST00000227889 1806 ntBASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms