Protein–RNA interactions for Protein: P62960

Ybx1, Nuclease-sensitive element-binding protein 1, mousemouse

Known RBP Predictions only

Length 322 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ybx1P62960 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
Ybx1P62960 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ybx1P62960 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Ybx1P62960 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Ybx1P62960 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ybx1P62960 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ybx1P62960 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Ybx1P62960 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ybx1P62960 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.81□□□□□ -0.04
Ybx1P62960 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.81□□□□□ -0.04
Ybx1P62960 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
Ybx1P62960 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC14.81□□□□□ -0.04
Ybx1P62960 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC14.81□□□□□ -0.04
Ybx1P62960 Gm21854-201ENSMUST00000179901 471 ntBASIC14.81□□□□□ -0.04
Ybx1P62960 Gm18018-201ENSMUST00000198273 408 ntBASIC14.81□□□□□ -0.04
Ybx1P62960 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Ybx1P62960 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ybx1P62960 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC14.81□□□□□ -0.04
Ybx1P62960 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ybx1P62960 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC14.8□□□□□ -0.04
Ybx1P62960 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
Ybx1P62960 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.8□□□□□ -0.04
Ybx1P62960 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Ybx1P62960 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC14.8□□□□□ -0.04
Ybx1P62960 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC14.8□□□□□ -0.04
Ybx1P62960 Gm28631-201ENSMUST00000190740 334 ntBASIC14.8□□□□□ -0.04
Ybx1P62960 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Ybx1P62960 Gm45384-201ENSMUST00000210451 277 ntBASIC14.8□□□□□ -0.04
Ybx1P62960 Gm45668-201ENSMUST00000211271 493 ntBASIC14.8□□□□□ -0.04
Ybx1P62960 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Ybx1P62960 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ybx1P62960 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
Ybx1P62960 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Ybx1P62960 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
Ybx1P62960 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Gm9182-201ENSMUST00000217829 639 ntBASIC14.79□□□□□ -0.04
Ybx1P62960 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Ybx1P62960 Gm9797-201ENSMUST00000052902 613 ntBASIC14.79□□□□□ -0.04
Ybx1P62960 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.79□□□□□ -0.04
Ybx1P62960 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ybx1P62960 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms