Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC16.94■□□□□ 0.3
Scn11aQ9R053 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Gm8835-201ENSMUST00000173096 1169 ntBASIC16.94■□□□□ 0.3
Scn11aQ9R053 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Gm8399-201ENSMUST00000082300 1117 ntBASIC16.94■□□□□ 0.3
Scn11aQ9R053 AC114543.1-201ENSMUST00000226451 1558 ntBASIC16.94■□□□□ 0.3
Scn11aQ9R053 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 CT009713.10-202ENSMUST00000225734 696 ntBASIC16.94■□□□□ 0.3
Scn11aQ9R053 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Scn11aQ9R053 AC161252.3-201ENSMUST00000225465 1549 ntBASIC16.94■□□□□ 0.3
Scn11aQ9R053 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC16.94■□□□□ 0.3
Scn11aQ9R053 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Gm7067-201ENSMUST00000207698 1249 ntBASIC16.93■□□□□ 0.3
Scn11aQ9R053 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn11aQ9R053 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Gm18905-201ENSMUST00000205454 928 ntBASIC16.92■□□□□ 0.3
Scn11aQ9R053 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Gm5356-201ENSMUST00000093326 615 ntBASIC16.92■□□□□ 0.3
Scn11aQ9R053 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Gm43179-201ENSMUST00000198797 275 ntBASIC16.92■□□□□ 0.3
Scn11aQ9R053 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn11aQ9R053 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Scn11aQ9R053 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Scn11aQ9R053 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn11aQ9R053 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Scn11aQ9R053 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn11aQ9R053 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Scn11aQ9R053 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms