Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
Trim54Q9ERP3 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC15.71■□□□□ 0.1
Trim54Q9ERP3 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim54Q9ERP3 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim54Q9ERP3 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim54Q9ERP3 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim54Q9ERP3 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Gm37230-201ENSMUST00000194491 818 ntBASIC15.7■□□□□ 0.1
Trim54Q9ERP3 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim54Q9ERP3 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Gm15321-201ENSMUST00000121290 288 ntBASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Gm29667-201ENSMUST00000190817 490 ntBASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Gm43703-201ENSMUST00000200523 763 ntBASIC15.69■□□□□ 0.1
Trim54Q9ERP3 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Gm3365-201ENSMUST00000216296 1480 ntBASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim54Q9ERP3 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Gm9182-201ENSMUST00000217829 639 ntBASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Gm6218-201ENSMUST00000219812 628 ntBASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 AC238811.1-201ENSMUST00000225302 441 ntBASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim54Q9ERP3 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms