Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Gm5303-201ENSMUST00000117943 1252 ntBASIC12.36□□□□□ -0.43
Col8a1Q00780 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC12.36□□□□□ -0.43
Col8a1Q00780 AC162801.1-201ENSMUST00000220612 198 ntBASIC12.36□□□□□ -0.43
Col8a1Q00780 Gm16476-201ENSMUST00000221544 139 ntBASIC12.36□□□□□ -0.43
Col8a1Q00780 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC12.36□□□□□ -0.43
Col8a1Q00780 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col8a1Q00780 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Gm38327-201ENSMUST00000195852 1755 ntBASIC12.35□□□□□ -0.43
Col8a1Q00780 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Col8a1Q00780 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC12.35□□□□□ -0.43
Col8a1Q00780 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.35□□□□□ -0.43
Col8a1Q00780 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC12.35□□□□□ -0.43
Col8a1Q00780 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
Col8a1Q00780 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC12.35□□□□□ -0.43
Col8a1Q00780 Gm21854-201ENSMUST00000179901 471 ntBASIC12.35□□□□□ -0.43
Col8a1Q00780 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.35□□□□□ -0.43
Col8a1Q00780 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC12.35□□□□□ -0.43
Col8a1Q00780 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Col8a1Q00780 Olfr582-201ENSMUST00000098212 960 ntBASIC12.35□□□□□ -0.43
Col8a1Q00780 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Col8a1Q00780 AC114008.2-201ENSMUST00000227699 1347 ntBASIC12.35□□□□□ -0.43
Col8a1Q00780 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col8a1Q00780 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Col8a1Q00780 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC12.34□□□□□ -0.43
Col8a1Q00780 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Col8a1Q00780 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Col8a1Q00780 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.34□□□□□ -0.43
Col8a1Q00780 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC12.34□□□□□ -0.43
Col8a1Q00780 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 AC164567.1-201ENSMUST00000219185 960 ntBASIC12.34□□□□□ -0.43
Col8a1Q00780 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
Col8a1Q00780 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Col8a1Q00780 Gm44616-201ENSMUST00000206417 1732 ntBASIC12.34□□□□□ -0.43
Col8a1Q00780 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col8a1Q00780 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Col8a1Q00780 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Col8a1Q00780 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms