Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.79□□□□□ -0.2
Lire1P11260 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.79□□□□□ -0.2
Lire1P11260 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.79□□□□□ -0.2
Lire1P11260 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Lire1P11260 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC13.79□□□□□ -0.2
Lire1P11260 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Lire1P11260 Gm9279-201ENSMUST00000223175 1606 ntBASIC13.79□□□□□ -0.2
Lire1P11260 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC13.79□□□□□ -0.2
Lire1P11260 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Lire1P11260 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Lire1P11260 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
Lire1P11260 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC13.78□□□□□ -0.2
Lire1P11260 Gm4609-201ENSMUST00000106443 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC13.78□□□□□ -0.2
Lire1P11260 Gm5138-201ENSMUST00000113842 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
Lire1P11260 Gm15191-201ENSMUST00000117933 1000 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm12182-201ENSMUST00000118655 1008 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm13882-201ENSMUST00000120886 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.78□□□□□ -0.2
Lire1P11260 Gm10284-201ENSMUST00000145057 1005 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC13.78□□□□□ -0.2
Lire1P11260 Gm10481-201ENSMUST00000179228 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm2574-201ENSMUST00000181051 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm3200-201ENSMUST00000181493 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm8825-201ENSMUST00000182565 998 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm4518-201ENSMUST00000182638 718 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm8330-201ENSMUST00000182754 1008 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm4575-201ENSMUST00000182991 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm8709-201ENSMUST00000183230 1012 ntBASIC13.78□□□□□ -0.2
Lire1P11260 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.78□□□□□ -0.2
Lire1P11260 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.78□□□□□ -0.2
Lire1P11260 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
Lire1P11260 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm10293-201ENSMUST00000076317 1002 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Gm6316-201ENSMUST00000082064 1020 ntBASIC13.78□□□□□ -0.2
Lire1P11260 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Lire1P11260 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
Lire1P11260 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Lire1P11260 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Lire1P11260 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Gm19863-201ENSMUST00000192480 2218 ntBASIC13.78□□□□□ -0.2
Lire1P11260 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Lire1P11260 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
Lire1P11260 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Lire1P11260 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
Lire1P11260 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Lire1P11260 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Lire1P11260 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
Lire1P11260 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Lire1P11260 Carlr-201ENSMUST00000181515 2574 ntBASIC13.77□□□□□ -0.21
Lire1P11260 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Gm27646-201ENSMUST00000183989 110 ntBASIC13.77□□□□□ -0.21
Lire1P11260 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC13.77□□□□□ -0.21
Lire1P11260 Gm10576-201ENSMUST00000191927 825 ntBASIC13.77□□□□□ -0.21
Lire1P11260 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC13.77□□□□□ -0.21
Lire1P11260 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.77□□□□□ -0.21
Lire1P11260 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC13.77□□□□□ -0.21
Lire1P11260 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.77□□□□□ -0.21
Lire1P11260 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Lire1P11260 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.77□□□□□ -0.21
Lire1P11260 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lire1P11260 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC13.76□□□□□ -0.21
Lire1P11260 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
Lire1P11260 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 239.6 ms