Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Gm4913-201ENSMUST00000117075 1290 ntBASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Prpf40aQ9R1C7 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Gm9385-201ENSMUST00000117563 472 ntBASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Gm2213-201ENSMUST00000197485 688 ntBASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Prpf40aQ9R1C7 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Rpph1-201ENSMUST00000175096 319 ntBASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 AC132104.2-201ENSMUST00000215011 266 ntBASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 CT943659.1-201ENSMUST00000215459 326 ntBASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Prpf40aQ9R1C7 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Gm6226-201ENSMUST00000117765 1146 ntBASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Gm11594-201ENSMUST00000122313 162 ntBASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Gm45612-201ENSMUST00000211320 160 ntBASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 CT025555.1-201ENSMUST00000225901 1217 ntBASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Gm15500-202ENSMUST00000071641 1019 ntBASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms