Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC16.99■□□□□ 0.31
Scn11aQ9R053 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Gm15806-201ENSMUST00000120696 955 ntBASIC16.98■□□□□ 0.31
Scn11aQ9R053 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Mir1982-201ENSMUST00000157368 74 ntBASIC16.98■□□□□ 0.31
Scn11aQ9R053 Snora78-201ENSMUST00000158630 128 ntBASIC16.98■□□□□ 0.31
Scn11aQ9R053 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Ighv1-51-201ENSMUST00000192903 354 ntBASIC16.98■□□□□ 0.31
Scn11aQ9R053 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC16.98■□□□□ 0.31
Scn11aQ9R053 Gm8463-201ENSMUST00000208573 613 ntBASIC16.98■□□□□ 0.31
Scn11aQ9R053 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Scn11aQ9R053 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm13385-201ENSMUST00000121089 220 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm9002-201ENSMUST00000178437 499 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Mir6392-201ENSMUST00000184924 108 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Mir7654-201ENSMUST00000185082 70 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm44981-201ENSMUST00000205549 1943 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm13226-201ENSMUST00000117838 404 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm12390-201ENSMUST00000117897 397 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Mir1894-201ENSMUST00000122802 81 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC16.97■□□□□ 0.31
Scn11aQ9R053 AC154171.1-201ENSMUST00000224610 643 ntBASIC16.97■□□□□ 0.31
Scn11aQ9R053 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Scn11aQ9R053 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Gm5912-201ENSMUST00000122282 1438 ntBASIC16.96■□□□□ 0.31
Scn11aQ9R053 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Gm42693-201ENSMUST00000196779 631 ntBASIC16.96■□□□□ 0.31
Scn11aQ9R053 Gm4959-201ENSMUST00000197271 1044 ntBASIC16.96■□□□□ 0.31
Scn11aQ9R053 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Gm9856-201ENSMUST00000217077 2578 ntBASIC16.96■□□□□ 0.31
Scn11aQ9R053 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Scn11aQ9R053 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
Scn11aQ9R053 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Gm19078-201ENSMUST00000206311 727 ntBASIC16.95■□□□□ 0.3
Scn11aQ9R053 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Scn11aQ9R053 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms