Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm12625-201ENSMUST00000179122 382 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm12614-201ENSMUST00000179586 382 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm12613-201ENSMUST00000180323 382 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Gm43072-201ENSMUST00000200283 1671 ntBASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Gm12208-201ENSMUST00000122004 163 ntBASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Gm43378-201ENSMUST00000199336 582 ntBASIC19.43■□□□□ 0.7
Scn4aQ9ER60 AC140293.1-201ENSMUST00000225626 1247 ntBASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Itm2b-204ENSMUST00000228637 783 ntBASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn4aQ9ER60 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Gm44100-201ENSMUST00000204329 436 ntBASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Gm13730-201ENSMUST00000121036 1462 ntBASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Scn4aQ9ER60 AC159196.2-201ENSMUST00000224082 1622 ntBASIC19.42■□□□□ 0.7
Scn4aQ9ER60 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm14130-201ENSMUST00000118417 987 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm13813-201ENSMUST00000120998 787 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm27023-201ENSMUST00000182372 285 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 AC122876.1-201ENSMUST00000217619 825 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 AC123857.2-201ENSMUST00000225756 1582 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 AC114543.1-201ENSMUST00000226451 1558 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm13859-201ENSMUST00000119936 1423 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm8793-201ENSMUST00000183069 1303 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Morn2-202ENSMUST00000227729 656 ntBASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn4aQ9ER60 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Gm11222-201ENSMUST00000119005 738 ntBASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Gm9083-201ENSMUST00000120423 819 ntBASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Gstp-ps-201ENSMUST00000195526 631 ntBASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Scn4aQ9ER60 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Scn4aQ9ER60 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
Scn4aQ9ER60 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Scn4aQ9ER60 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Scn4aQ9ER60 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC19.39■□□□□ 0.7
Scn4aQ9ER60 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Scn4aQ9ER60 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms