Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.18□□□□□ -0.14
Msh4Q99MT2 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC14.18□□□□□ -0.14
Msh4Q99MT2 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC14.18□□□□□ -0.14
Msh4Q99MT2 Gm10154-201ENSMUST00000084445 354 ntBASIC14.18□□□□□ -0.14
Msh4Q99MT2 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Msh4Q99MT2 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Gm9385-201ENSMUST00000117563 472 ntBASIC14.17□□□□□ -0.14
Msh4Q99MT2 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Msh4Q99MT2 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Msh4Q99MT2 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.16□□□□□ -0.14
Msh4Q99MT2 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msh4Q99MT2 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.16□□□□□ -0.14
Msh4Q99MT2 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC14.16□□□□□ -0.14
Msh4Q99MT2 Chchd1-203ENSMUST00000224633 557 ntBASIC14.16□□□□□ -0.14
Msh4Q99MT2 CT010506.4-201ENSMUST00000225457 351 ntBASIC14.16□□□□□ -0.14
Msh4Q99MT2 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms