Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Gm15222-202ENSMUST00000228667 1726 ntBASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Gm15460-201ENSMUST00000118147 391 ntBASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Gm15393-201ENSMUST00000120499 219 ntBASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 AC154687.2-201ENSMUST00000223853 640 ntBASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 AC154846.1-201ENSMUST00000226278 862 ntBASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3aQ3ULJ3 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Gm42901-201ENSMUST00000197735 3171 ntBASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3aQ3ULJ3 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Ldha-ps-201ENSMUST00000119390 995 ntBASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Mir6392-201ENSMUST00000184924 108 ntBASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Gm37748-201ENSMUST00000194379 1140 ntBASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Gm19220-201ENSMUST00000222682 803 ntBASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Gm25857-201ENSMUST00000082788 129 ntBASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3aQ3ULJ3 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms