Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Rfx3P48381 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Rfx3P48381 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Rfx3P48381 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.15□□□□□ -0.3
Rfx3P48381 Gm9449-201ENSMUST00000207265 1011 ntBASIC13.15□□□□□ -0.3
Rfx3P48381 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC13.15□□□□□ -0.3
Rfx3P48381 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
Rfx3P48381 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Rfx3P48381 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rfx3P48381 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC13.15□□□□□ -0.3
Rfx3P48381 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Rfx3P48381 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.31
Rfx3P48381 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Rfx3P48381 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
Rfx3P48381 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Rfx3P48381 Gm42632-201ENSMUST00000201707 2411 ntBASIC13.14□□□□□ -0.31
Rfx3P48381 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC13.14□□□□□ -0.31
Rfx3P48381 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC13.14□□□□□ -0.31
Rfx3P48381 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Rfx3P48381 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.14□□□□□ -0.31
Rfx3P48381 AC164567.1-201ENSMUST00000219185 960 ntBASIC13.14□□□□□ -0.31
Rfx3P48381 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13.14□□□□□ -0.31
Rfx3P48381 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Rfx3P48381 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Rfx3P48381 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Rfx3P48381 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rfx3P48381 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC13.13□□□□□ -0.31
Rfx3P48381 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.13□□□□□ -0.31
Rfx3P48381 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC13.13□□□□□ -0.31
Rfx3P48381 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Rfx3P48381 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Gm42471-201ENSMUST00000201457 1865 ntBASIC13.13□□□□□ -0.31
Rfx3P48381 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC13.13□□□□□ -0.31
Rfx3P48381 Mir5126-201ENSMUST00000175513 77 ntBASIC13.13□□□□□ -0.31
Rfx3P48381 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Gm27628-201ENSMUST00000184911 107 ntBASIC13.13□□□□□ -0.31
Rfx3P48381 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC13.13□□□□□ -0.31
Rfx3P48381 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC13.13□□□□□ -0.31
Rfx3P48381 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Rfx3P48381 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Rfx3P48381 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Rfx3P48381 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rfx3P48381 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms