Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn11aQ9R053 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn11aQ9R053 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn11aQ9R053 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Scn11aQ9R053 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC17.02■□□□□ 0.31
Scn11aQ9R053 Gm12960-201ENSMUST00000120017 1066 ntBASIC17.02■□□□□ 0.31
Scn11aQ9R053 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC17.02■□□□□ 0.31
Scn11aQ9R053 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC17.02■□□□□ 0.31
Scn11aQ9R053 Gm26464-201ENSMUST00000157094 305 ntBASIC17.02■□□□□ 0.31
Scn11aQ9R053 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Scn11aQ9R053 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Scn11aQ9R053 Gm2445-201ENSMUST00000182798 989 ntBASIC17.02■□□□□ 0.31
Scn11aQ9R053 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Scn11aQ9R053 AC155252.1-201ENSMUST00000226462 1208 ntBASIC17.02■□□□□ 0.31
Scn11aQ9R053 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.01■□□□□ 0.31
Scn11aQ9R053 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
Scn11aQ9R053 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Gm27701-201ENSMUST00000184498 110 ntBASIC17.01■□□□□ 0.31
Scn11aQ9R053 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC17.01■□□□□ 0.31
Scn11aQ9R053 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn11aQ9R053 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC17■□□□□ 0.31
Scn11aQ9R053 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Gm42471-201ENSMUST00000201457 1865 ntBASIC17■□□□□ 0.31
Scn11aQ9R053 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC17■□□□□ 0.31
Scn11aQ9R053 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC17■□□□□ 0.31
Scn11aQ9R053 Gm2495-201ENSMUST00000191160 466 ntBASIC17■□□□□ 0.31
Scn11aQ9R053 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 AC155286.1-201ENSMUST00000218632 448 ntBASIC17■□□□□ 0.31
Scn11aQ9R053 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Scn11aQ9R053 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Scn11aQ9R053 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
Scn11aQ9R053 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Gm9109-201ENSMUST00000120254 1405 ntBASIC17■□□□□ 0.31
Scn11aQ9R053 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Scn11aQ9R053 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC17■□□□□ 0.31
Scn11aQ9R053 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC17■□□□□ 0.31
Scn11aQ9R053 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn11aQ9R053 Gm11524-201ENSMUST00000119349 807 ntBASIC17■□□□□ 0.31
Scn11aQ9R053 CT030704.2-201ENSMUST00000228887 494 ntBASIC17■□□□□ 0.31
Scn11aQ9R053 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Scn11aQ9R053 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Scn11aQ9R053 AC168058.1-201ENSMUST00000219521 2282 ntBASIC16.99■□□□□ 0.31
Scn11aQ9R053 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 AC166574.6-201ENSMUST00000227889 1806 ntBASIC16.99■□□□□ 0.31
Scn11aQ9R053 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Gm15376-201ENSMUST00000122258 783 ntBASIC16.99■□□□□ 0.31
Scn11aQ9R053 Gm4804-201ENSMUST00000182234 999 ntBASIC16.99■□□□□ 0.31
Scn11aQ9R053 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC16.99■□□□□ 0.31
Scn11aQ9R053 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC16.99■□□□□ 0.31
Scn11aQ9R053 Gm10478-201ENSMUST00000084451 396 ntBASIC16.99■□□□□ 0.31
Scn11aQ9R053 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms