Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Smco4Q9JIS3 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Smco4Q9JIS3 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Smco4Q9JIS3 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Smco4Q9JIS3 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Smco4Q9JIS3 Gm13337-201ENSMUST00000119183 1594 ntBASIC11.71□□□□□ -0.54
Smco4Q9JIS3 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Smco4Q9JIS3 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Smco4Q9JIS3 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Gm27194-201ENSMUST00000175753 2936 ntBASIC11.7□□□□□ -0.54
Smco4Q9JIS3 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Gm25925-201ENSMUST00000158314 306 ntBASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Gm3807-201ENSMUST00000193520 1168 ntBASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 AC139054.1-201ENSMUST00000226898 1598 ntBASIC11.69□□□□□ -0.54
Smco4Q9JIS3 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Smco4Q9JIS3 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Smco4Q9JIS3 AC164702.1-201ENSMUST00000220135 2212 ntBASIC11.68□□□□□ -0.54
Smco4Q9JIS3 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms