Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Gm11618-201ENSMUST00000117946 267 ntBASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Gm24420-201ENSMUST00000176676 59 ntBASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Gm5869-201ENSMUST00000200248 1257 ntBASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 D9Wsu149-201ENSMUST00000214169 594 ntBASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn4aQ9ER60 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gm5051-201ENSMUST00000204085 485 ntBASIC19.46■□□□□ 0.71
Scn4aQ9ER60 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gm2824-203ENSMUST00000226189 1228 ntBASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn4aQ9ER60 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Gm4993-201ENSMUST00000118719 1174 ntBASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Gm11591-201ENSMUST00000120063 702 ntBASIC19.45■□□□□ 0.7
Scn4aQ9ER60 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Scn4aQ9ER60 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm23200-201ENSMUST00000104379 132 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm12616-201ENSMUST00000118594 382 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm11400-201ENSMUST00000120853 1214 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm12624-201ENSMUST00000177615 382 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm12621-201ENSMUST00000177760 382 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm12615-201ENSMUST00000177970 382 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm12622-201ENSMUST00000177975 382 ntBASIC19.44■□□□□ 0.7
Scn4aQ9ER60 Gm12627-201ENSMUST00000178412 382 ntBASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms