Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf1Q9EPU4 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf1Q9EPU4 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf1Q9EPU4 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf1Q9EPU4 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Gm42612-201ENSMUST00000197986 623 ntBASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Gm43170-201ENSMUST00000199827 612 ntBASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Gm9794-201ENSMUST00000202370 423 ntBASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC19.9■□□□□ 0.78
Cpsf1Q9EPU4 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC19.89■□□□□ 0.78
Cpsf1Q9EPU4 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC19.89■□□□□ 0.78
Cpsf1Q9EPU4 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Gm7653-201ENSMUST00000214567 508 ntBASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 AC154231.1-201ENSMUST00000220564 2175 ntBASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf1Q9EPU4 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Gm6912-201ENSMUST00000117218 544 ntBASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Gm21470-201ENSMUST00000187680 696 ntBASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Cpsf1Q9EPU4 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Gm15240-201ENSMUST00000118156 720 ntBASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Gm18027-201ENSMUST00000218947 619 ntBASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf1Q9EPU4 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms