Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm9797-201ENSMUST00000052902 613 ntBASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Gm12882-201ENSMUST00000121696 517 ntBASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp40Q8BWR4 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Usp40Q8BWR4 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Usp40Q8BWR4 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Ighv1-25-201ENSMUST00000195638 345 ntBASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Gm5357-201ENSMUST00000212720 1924 ntBASIC19.89■□□□□ 0.77
Usp40Q8BWR4 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Gm6180-201ENSMUST00000065243 498 ntBASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp40Q8BWR4 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Gm6912-201ENSMUST00000117218 544 ntBASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Gm12585-201ENSMUST00000117307 290 ntBASIC19.88■□□□□ 0.77
Usp40Q8BWR4 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 AC154239.3-201ENSMUST00000226933 674 ntBASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp40Q8BWR4 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Gm23984-201ENSMUST00000157139 203 ntBASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Gm28760-201ENSMUST00000185995 736 ntBASIC19.87■□□□□ 0.77
Usp40Q8BWR4 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp40Q8BWR4 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms