Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Six3Q62233 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Six3Q62233 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
Six3Q62233 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Six3Q62233 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Six3Q62233 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Six3Q62233 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.26□□□□□ -0.13
Six3Q62233 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Six3Q62233 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Six3Q62233 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Six3Q62233 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.25□□□□□ -0.13
Six3Q62233 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC14.25□□□□□ -0.13
Six3Q62233 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Gm2272-201ENSMUST00000194903 582 ntBASIC14.25□□□□□ -0.13
Six3Q62233 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC14.25□□□□□ -0.13
Six3Q62233 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Six3Q62233 AC164565.1-201ENSMUST00000217520 1484 ntBASIC14.25□□□□□ -0.13
Six3Q62233 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Six3Q62233 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.24□□□□□ -0.13
Six3Q62233 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Six3Q62233 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC14.24□□□□□ -0.13
Six3Q62233 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC14.24□□□□□ -0.13
Six3Q62233 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Six3Q62233 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC14.24□□□□□ -0.13
Six3Q62233 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC14.24□□□□□ -0.13
Six3Q62233 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.24□□□□□ -0.13
Six3Q62233 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.24□□□□□ -0.13
Six3Q62233 Gm4691-201ENSMUST00000182339 1000 ntBASIC14.24□□□□□ -0.13
Six3Q62233 Gm2451-201ENSMUST00000199447 999 ntBASIC14.24□□□□□ -0.13
Six3Q62233 Gm10290-201ENSMUST00000200451 999 ntBASIC14.24□□□□□ -0.13
Six3Q62233 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC14.24□□□□□ -0.13
Six3Q62233 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Six3Q62233 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC14.24□□□□□ -0.13
Six3Q62233 Gm10154-201ENSMUST00000084445 354 ntBASIC14.24□□□□□ -0.13
Six3Q62233 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Six3Q62233 Gm14451-201ENSMUST00000121581 1542 ntBASIC14.24□□□□□ -0.13
Six3Q62233 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Six3Q62233 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Six3Q62233 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Six3Q62233 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Six3Q62233 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.23□□□□□ -0.13
Six3Q62233 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Six3Q62233 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms