Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Gm16026-204ENSMUST00000162652 683 ntBASIC16.05■□□□□ 0.16
Hmgb1P63158 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.05■□□□□ 0.16
Hmgb1P63158 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.05■□□□□ 0.16
Hmgb1P63158 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.05■□□□□ 0.16
Hmgb1P63158 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
Hmgb1P63158 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Hmgb1P63158 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC16.05■□□□□ 0.16
Hmgb1P63158 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC16.05■□□□□ 0.16
Hmgb1P63158 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Hmgb1P63158 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb1P63158 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC16.04■□□□□ 0.16
Hmgb1P63158 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Hmgb1P63158 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
Hmgb1P63158 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Hmgb1P63158 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Hmgb1P63158 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Gm4081-201ENSMUST00000195287 1838 ntBASIC16.04■□□□□ 0.16
Hmgb1P63158 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.04■□□□□ 0.16
Hmgb1P63158 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.04■□□□□ 0.16
Hmgb1P63158 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.04■□□□□ 0.16
Hmgb1P63158 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.04■□□□□ 0.16
Hmgb1P63158 Gm10154-201ENSMUST00000084445 354 ntBASIC16.04■□□□□ 0.16
Hmgb1P63158 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.04■□□□□ 0.16
Hmgb1P63158 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Hmgb1P63158 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb1P63158 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Hmgb1P63158 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb1P63158 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.03■□□□□ 0.16
Hmgb1P63158 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.03■□□□□ 0.16
Hmgb1P63158 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC16.03■□□□□ 0.16
Hmgb1P63158 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC16.03■□□□□ 0.16
Hmgb1P63158 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb1P63158 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb1P63158 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb1P63158 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.03■□□□□ 0.16
Hmgb1P63158 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb1P63158 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb1P63158 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb1P63158 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Hmgb1P63158 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb1P63158 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb1P63158 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
Hmgb1P63158 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb1P63158 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Hmgb1P63158 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
Hmgb1P63158 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.16
Hmgb1P63158 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb1P63158 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb1P63158 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms