Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Gm45630-201ENSMUST00000210243 1911 ntBASIC17.06■□□□□ 0.32
Scn11aQ9R053 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC17.05■□□□□ 0.32
Scn11aQ9R053 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC17.05■□□□□ 0.32
Scn11aQ9R053 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm21470-201ENSMUST00000187680 696 ntBASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm19220-201ENSMUST00000222682 803 ntBASIC17.05■□□□□ 0.32
Scn11aQ9R053 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 AC121801.1-201ENSMUST00000225363 1899 ntBASIC17.05■□□□□ 0.32
Scn11aQ9R053 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm15240-201ENSMUST00000118156 720 ntBASIC17.05■□□□□ 0.32
Scn11aQ9R053 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Mir3102-201ENSMUST00000175555 104 ntBASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Gm17795-201ENSMUST00000214505 757 ntBASIC17.05■□□□□ 0.32
Scn11aQ9R053 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn11aQ9R053 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.04■□□□□ 0.32
Scn11aQ9R053 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Gm15198-201ENSMUST00000117283 177 ntBASIC17.04■□□□□ 0.32
Scn11aQ9R053 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC17.04■□□□□ 0.32
Scn11aQ9R053 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC17.04■□□□□ 0.32
Scn11aQ9R053 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.04■□□□□ 0.32
Scn11aQ9R053 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn11aQ9R053 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC17.03■□□□□ 0.32
Scn11aQ9R053 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.03■□□□□ 0.32
Scn11aQ9R053 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn11aQ9R053 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC17.02■□□□□ 0.32
Scn11aQ9R053 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 CT030657.3-201ENSMUST00000222707 1200 ntBASIC17.02■□□□□ 0.32
Scn11aQ9R053 CT485787.1-201ENSMUST00000225617 968 ntBASIC17.02■□□□□ 0.32
Scn11aQ9R053 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn11aQ9R053 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms