Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdk5rap3Q99LM2 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Gm14451-201ENSMUST00000121581 1542 ntBASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Gm13464-201ENSMUST00000119418 935 ntBASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Gm6184-201ENSMUST00000120403 1261 ntBASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Gm10459-201ENSMUST00000202708 1155 ntBASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 AC131743.5-201ENSMUST00000220775 1618 ntBASIC15.14■□□□□ 0.01
Cdk5rap3Q99LM2 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 AC161829.1-201ENSMUST00000220298 281 ntBASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdk5rap3Q99LM2 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Gm13036-201ENSMUST00000117799 748 ntBASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Gm17971-201ENSMUST00000190239 806 ntBASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Gm42670-201ENSMUST00000201816 1292 ntBASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC15.12■□□□□ 0.01
Cdk5rap3Q99LM2 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms