Protein–RNA interactions for Protein: Q62018

Ctr9, RNA polymerase-associated protein CTR9 homolog, mousemouse

Known RBP Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ctr9Q62018 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC17.21■□□□□ 0.35
Ctr9Q62018 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Gm45760-201ENSMUST00000212190 1782 ntBASIC17.21■□□□□ 0.35
Ctr9Q62018 Gm13517-201ENSMUST00000120782 1495 ntBASIC17.21■□□□□ 0.35
Ctr9Q62018 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC17.21■□□□□ 0.35
Ctr9Q62018 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Ctr9Q62018 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
Ctr9Q62018 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Ctr9Q62018 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
Ctr9Q62018 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Sybu-209ENSMUST00000228639 4113 ntBASIC17.21■□□□□ 0.35
Ctr9Q62018 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ctr9Q62018 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ctr9Q62018 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Efs-202ENSMUST00000227037 2540 ntBASIC17.2■□□□□ 0.34
Ctr9Q62018 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
Ctr9Q62018 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Gm13823-201ENSMUST00000119930 345 ntBASIC17.2■□□□□ 0.34
Ctr9Q62018 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.2■□□□□ 0.34
Ctr9Q62018 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC17.2■□□□□ 0.34
Ctr9Q62018 Gm37230-201ENSMUST00000194491 818 ntBASIC17.2■□□□□ 0.34
Ctr9Q62018 AC158982.1-201ENSMUST00000228377 901 ntBASIC17.2■□□□□ 0.34
Ctr9Q62018 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Ctr9Q62018 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Ctr9Q62018 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Ctr9Q62018 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.2■□□□□ 0.34
Ctr9Q62018 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Ctr9Q62018 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ctr9Q62018 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Ctr9Q62018 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC17.19■□□□□ 0.34
Ctr9Q62018 Gm13223-201ENSMUST00000118609 747 ntBASIC17.19■□□□□ 0.34
Ctr9Q62018 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC17.19■□□□□ 0.34
Ctr9Q62018 Gm28630-201ENSMUST00000187806 498 ntBASIC17.19■□□□□ 0.34
Ctr9Q62018 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.19■□□□□ 0.34
Ctr9Q62018 Rbfox2-208ENSMUST00000227930 1218 ntBASIC17.19■□□□□ 0.34
Ctr9Q62018 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Ctr9Q62018 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Ctr9Q62018 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Ctr9Q62018 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ctr9Q62018 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17.18■□□□□ 0.34
Ctr9Q62018 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ctr9Q62018 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms