Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm14026-201ENSMUST00000120625 1789 ntBASIC12.44□□□□□ -0.42
Col8a1Q00780 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm15806-201ENSMUST00000120696 955 ntBASIC12.44□□□□□ -0.42
Col8a1Q00780 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC12.44□□□□□ -0.42
Col8a1Q00780 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Mir6392-201ENSMUST00000184924 108 ntBASIC12.44□□□□□ -0.42
Col8a1Q00780 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm45331-201ENSMUST00000209868 554 ntBASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm18624-201ENSMUST00000220966 658 ntBASIC12.44□□□□□ -0.42
Col8a1Q00780 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm45212-201ENSMUST00000205831 3403 ntBASIC12.44□□□□□ -0.42
Col8a1Q00780 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC12.43□□□□□ -0.42
Col8a1Q00780 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Gm12742-201ENSMUST00000117326 410 ntBASIC12.43□□□□□ -0.42
Col8a1Q00780 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Col8a1Q00780 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
Col8a1Q00780 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Gm5035-201ENSMUST00000215581 927 ntBASIC12.43□□□□□ -0.42
Col8a1Q00780 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 AC131743.5-201ENSMUST00000220775 1618 ntBASIC12.43□□□□□ -0.42
Col8a1Q00780 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC12.43□□□□□ -0.42
Col8a1Q00780 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col8a1Q00780 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Gm45293-201ENSMUST00000209754 1812 ntBASIC12.42□□□□□ -0.42
Col8a1Q00780 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Gm12957-201ENSMUST00000117835 377 ntBASIC12.42□□□□□ -0.42
Col8a1Q00780 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Gm7390-201ENSMUST00000212452 1216 ntBASIC12.42□□□□□ -0.42
Col8a1Q00780 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms