Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC17.48■□□□□ 0.39
Rfx1P48377 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Rfx1P48377 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Rfx1P48377 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Rfx1P48377 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Rfx1P48377 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Gm4535-201ENSMUST00000182274 558 ntBASIC17.47■□□□□ 0.39
Rfx1P48377 Gm5253-201ENSMUST00000187104 1025 ntBASIC17.47■□□□□ 0.39
Rfx1P48377 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Rfx1P48377 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Rfx1P48377 Gm10355-201ENSMUST00000097146 517 ntBASIC17.47■□□□□ 0.39
Rfx1P48377 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC17.47■□□□□ 0.39
Rfx1P48377 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Rfx1P48377 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Rfx1P48377 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx1P48377 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Rfx1P48377 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Gm13418-201ENSMUST00000119097 944 ntBASIC17.46■□□□□ 0.39
Rfx1P48377 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.46■□□□□ 0.39
Rfx1P48377 Gm18489-201ENSMUST00000172565 551 ntBASIC17.46■□□□□ 0.39
Rfx1P48377 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Rfx1P48377 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Rfx1P48377 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx1P48377 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Rfx1P48377 AC166491.1-201ENSMUST00000227053 2308 ntBASIC17.46■□□□□ 0.38
Rfx1P48377 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Rfx1P48377 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Rfx1P48377 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC17.45■□□□□ 0.38
Rfx1P48377 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.45■□□□□ 0.38
Rfx1P48377 Gm5682-201ENSMUST00000173402 505 ntBASIC17.45■□□□□ 0.38
Rfx1P48377 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.45■□□□□ 0.38
Rfx1P48377 Gm9682-201ENSMUST00000197505 556 ntBASIC17.45■□□□□ 0.38
Rfx1P48377 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.45■□□□□ 0.38
Rfx1P48377 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Rfx1P48377 AC147366.1-201ENSMUST00000227671 852 ntBASIC17.45■□□□□ 0.38
Rfx1P48377 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Gm37691-201ENSMUST00000192147 2573 ntBASIC17.45■□□□□ 0.38
Rfx1P48377 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx1P48377 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
Rfx1P48377 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Rfx1P48377 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Rfx1P48377 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC17.44■□□□□ 0.38
Rfx1P48377 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx1P48377 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Rfx1P48377 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms