Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Col3a1P08121 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col3a1P08121 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.25■□□□□ 0.35
Col3a1P08121 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Col3a1P08121 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
Col3a1P08121 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC17.25■□□□□ 0.35
Col3a1P08121 Ssr1-204ENSMUST00000225319 1610 ntBASIC17.25■□□□□ 0.35
Col3a1P08121 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
Col3a1P08121 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC17.24■□□□□ 0.35
Col3a1P08121 Gm23984-201ENSMUST00000157139 203 ntBASIC17.24■□□□□ 0.35
Col3a1P08121 AC165157.4-201ENSMUST00000220587 139 ntBASIC17.24■□□□□ 0.35
Col3a1P08121 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC17.24■□□□□ 0.35
Col3a1P08121 AC154846.1-201ENSMUST00000226278 862 ntBASIC17.24■□□□□ 0.35
Col3a1P08121 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Col3a1P08121 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Col3a1P08121 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col3a1P08121 Gm6283-201ENSMUST00000182369 1000 ntBASIC17.24■□□□□ 0.35
Col3a1P08121 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Col3a1P08121 Cdk7-205ENSMUST00000225990 1159 ntBASIC17.24■□□□□ 0.35
Col3a1P08121 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col3a1P08121 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col3a1P08121 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC17.23■□□□□ 0.35
Col3a1P08121 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC17.23■□□□□ 0.35
Col3a1P08121 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC17.23■□□□□ 0.35
Col3a1P08121 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
Col3a1P08121 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC17.23■□□□□ 0.35
Col3a1P08121 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC17.23■□□□□ 0.35
Col3a1P08121 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Ighv8-14-201ENSMUST00000196781 358 ntBASIC17.23■□□□□ 0.35
Col3a1P08121 Gm6745-201ENSMUST00000199216 526 ntBASIC17.23■□□□□ 0.35
Col3a1P08121 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Gm19220-201ENSMUST00000222682 803 ntBASIC17.23■□□□□ 0.35
Col3a1P08121 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 AC238811.3-201ENSMUST00000225422 709 ntBASIC17.23■□□□□ 0.35
Col3a1P08121 AC139350.3-201ENSMUST00000226151 420 ntBASIC17.23■□□□□ 0.35
Col3a1P08121 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
Col3a1P08121 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col3a1P08121 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col3a1P08121 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Col3a1P08121 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC17.22■□□□□ 0.35
Col3a1P08121 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.22■□□□□ 0.35
Col3a1P08121 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Col3a1P08121 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC17.22■□□□□ 0.35
Col3a1P08121 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Col3a1P08121 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC17.22■□□□□ 0.35
Col3a1P08121 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Col3a1P08121 Gm5354-201ENSMUST00000182417 973 ntBASIC17.22■□□□□ 0.35
Col3a1P08121 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms