Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim54Q9ERP3 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim54Q9ERP3 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim54Q9ERP3 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Gm6944-201ENSMUST00000182449 1006 ntBASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Gm27680-201ENSMUST00000184192 160 ntBASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Shd-206ENSMUST00000225145 998 ntBASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim54Q9ERP3 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Gm5745-201ENSMUST00000183748 313 ntBASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim54Q9ERP3 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Gm43352-201ENSMUST00000196419 3065 ntBASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Trav13-3-201ENSMUST00000117226 336 ntBASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Gm2451-201ENSMUST00000199447 999 ntBASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Gm10290-201ENSMUST00000200451 999 ntBASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC15.8■□□□□ 0.12
Trim54Q9ERP3 Gm7730-201ENSMUST00000212486 454 ntBASIC15.8■□□□□ 0.12
Trim54Q9ERP3 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms