Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Gm45667-201ENSMUST00000210380 1316 ntBASIC20■□□□□ 0.79
Usp40Q8BWR4 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Gm42632-201ENSMUST00000201707 2411 ntBASIC20■□□□□ 0.79
Usp40Q8BWR4 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp40Q8BWR4 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Gm14928-201ENSMUST00000120198 477 ntBASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp40Q8BWR4 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Gm21854-201ENSMUST00000179901 471 ntBASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Ldb3-207ENSMUST00000227819 1499 ntBASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp40Q8BWR4 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp40Q8BWR4 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms