Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Gm43570-201ENSMUST00000199951 3688 ntBASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc40Q8BI79 Matn2-206ENSMUST00000228570 2798 ntBASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Gm11873-201ENSMUST00000117877 1304 ntBASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Gm12350-201ENSMUST00000121208 462 ntBASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Gm2651-201ENSMUST00000203560 838 ntBASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc40Q8BI79 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Gm13294-201ENSMUST00000121757 1330 ntBASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Gm27628-201ENSMUST00000184911 107 ntBASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc40Q8BI79 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Kcnk16-202ENSMUST00000225596 2127 ntBASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc40Q8BI79 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms