Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Gm10154-201ENSMUST00000084445 354 ntBASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Trav5d-4Q5R1F6 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC12.58□□□□□ -0.39
Trav5d-4Q5R1F6 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trav5d-4Q5R1F6 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.39
Trav5d-4Q5R1F6 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trav5d-4Q5R1F6 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Gm2272-201ENSMUST00000194903 582 ntBASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Gm8096-201ENSMUST00000209921 1591 ntBASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Psmb5-202ENSMUST00000227257 622 ntBASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav5d-4Q5R1F6 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Gm16198-201ENSMUST00000118766 670 ntBASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Gm8597-201ENSMUST00000191525 1109 ntBASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trav5d-4Q5R1F6 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms