Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Gm9856-201ENSMUST00000217077 2578 ntBASIC17.22■□□□□ 0.35
Limch1Q3UH68 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.21■□□□□ 0.35
Limch1Q3UH68 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Thap2-203ENSMUST00000218989 527 ntBASIC17.21■□□□□ 0.35
Limch1Q3UH68 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Limch1Q3UH68 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Limch1Q3UH68 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Limch1Q3UH68 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 AA543401-201ENSMUST00000164248 1269 ntBASIC17.2■□□□□ 0.34
Limch1Q3UH68 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Limch1Q3UH68 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Gm11745-201ENSMUST00000121669 448 ntBASIC17.19■□□□□ 0.34
Limch1Q3UH68 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC17.19■□□□□ 0.34
Limch1Q3UH68 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Limch1Q3UH68 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms